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A pathology atlas of the human cancer transcriptome

M. Uhlen ; C. Zhang ; S. Lee ; E. Sjostedt ; L. Fagerberg ; G. Bidkhori ; R. Benfeitas ; M. Arif ; Z. T. Liu ; F. Edfors ; K. Sanli ; K. von Feilitzen ; P. Oksvold ; E. Lundberg ; S. Hober ; P. Nilsson ; J. Mattsson ; J. M. Schwenk ; H. Brunnstrom ; B. Glimelius ; T. Sjoblom ; P. H. Edqvist ; D. Djureinovic ; P. Micke ; C. Lindskog ; Adil Mardinoglu (Institutionen för biologi och bioteknik, Systembiologi) ; F. Ponten
Science (0036-8075). Vol. 357 (2017), 6352, p. 660-+.
[Artikel, refereegranskad vetenskaplig]

Cancer is one of the leading causes of death, and there is great interest in understanding the underlying molecular mechanisms involved in the pathogenesis and progression of individual tumors. We used systems-level approaches to analyze the genome-wide transcriptome of the protein-coding genes of 17 major cancer types with respect to clinical outcome. A general pattern emerged: Shorter patient survival was associated with up-regulation of genes involved in cell growth and with down-regulation of genes involved in cellular differentiation. Using genome-scale metabolic models, we show that cancer patients have widespread metabolic heterogeneity, highlighting the need for precise and personalized medicine for cancer treatment. All data are presented in an interactive open-access database (www.proteinatlas.org/pathology) to allow genome-wide exploration of the impact of individual proteins on clinical outcomes.

Nyckelord: Cell Lung-Cancer, Breast-Cancer, Expression, Carcinoma, RNA, Metabolism, Hallmarks



Denna post skapades 2017-09-13. Senast ändrad 2017-09-14.
CPL Pubid: 251875

 

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Institutioner (Chalmers)

Institutionen för biologi och bioteknik, Systembiologi

Ämnesområden

Medicinska grundvetenskaper

Chalmers infrastruktur